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See Our Team

年度 著作
2019C.N. Chow, T.Y. Lee, Y.C. Hung, G.Z. Li, K.C. Tseng, Y.H. Liu, P.L. Kuo, H.Q. Zheng, W.C. Chang* (2019) PlantPAN3.0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants,Nucleic Acids Research, 47(D1):D1155–D1163.

2019W.J Zhuang, H. Chen, M. Yang, J.P Wang, Manish K. Pandey, C. Zhang, W.C. Chang, L.S. Zhang, X.T. Zhang, R.H. Tang, Vanika Garg, X.J. Wang, H.B. Tang, C.N. Chow, J.P. Wang, Ye Deng, D.P. Wang, Aamir W. Khan, Q. Yang, T.C. Cai, Prasad Bajaj, K.C. Wu, B.Z. G (2019) The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication,Nature Genetics, :.

2018K.C. Tseng, Y.F. Chiang-Hsieh, H. Pai, C.N. Chow, S.C. Lee, H.Q. Zheng, P.L. Kuo, G.Z. Li, Y.C. Hung, N.S. Lin, and W.C. Chang* (2018) microRPM: a microRNA prediction model based only on plant small RNA sequencing data.,Bioinformatics, 34(7):1108–1115.

2018C. N. Chow, Y. F. Chiang-Hsieh, C. H. Chien, H. Q. Zheng, T. Z. Tzong, N. Y. Wu, K. C. Tseng, P. F. Hou and W. C. Chang* (2018) Delineation of condition specific cis- and trans- acting elements in plant promoters under various endo- and exogenous stimuli,BMC Genomics, 19(Suppl 2):85.

2018P. F. Hou, C.H. Chien, Y.F. Chiang-Hsieh, K.C. Tseng, C.N. Chow, H.J. Huang and W. C. Chang* (2018) Paddy-upland rotation for sustainable agriculture with regards to diverse soil microbial community,Scientific Reports, 8:7966.

2017H.Q. Zheng, N.Y. Wu, C.N. Chow, K.C. Tseng, C.H. Chien, Y.C. Hung, G.Z. Li, and W.C. Chang* (2017) EXPath tool-a system for comprehensively analyzing regulatory pathways and coexpression networks from high-throughput transcriptome data.,DNA Research, 24(4):371-375.

2016C.N. Chow, H.Q. Zheng, N.Y. Wu, C.H. Chien, H.D. Huang, T.Y. Lee, Y.F. Chiang-Hsieh, P.F. Hou, T.Y. Yang, and W. C. Chang* (2016) PlantPAN 2.0: an update of Plant Promoter Analysis Navigator for reconstructing transcriptional regulatory networks in plants.,Nucleic Acids Research, 44(D1):D1154-60.

2016W. C. Chang, H.Q. Zheng, C. N. N. Chen (2016) Comparative transcriptome analysis reveals a potential photosynthate partitioning mechanism between lipid and starch biosynthetic pathways in green microalgae, Algal Research, 16:54-62.

2015C.H. Chien, C.N. Chow, N.Y. Wu, Y.F. Chiang-Hsieh, P.F. Hou, and W.C. Chang* (2015) EXPath: a database of comparative expression analysis inferring metabolic pathways for plants,BMC Genomics, 16(Suppl 2):S6:page10.

2015C.H. Chien, Y.F. Chiang-Hsieh, Y.A. Chen, C.N. Chow, N.Y. Wu, P.F. Hou, and W.C. Chang* (2015) AtmiRNET: a web-based resource for reconstructing regulatory networks of Arabidopsis microRNAs,Database (Oxford), 2015:bav042.

2014H. Q. Zheng, Y. F. Chiang-Hsieh, C. H. Chien, J. B.K. Hsu, T. L. Liu, C. N. Chen, and W. C. Chang* (2014) AlgaePath: comprehensive analysis of metabolic pathways using transcript abundance data from next-generation sequencing in green algae,BMC Genomics, 15:196.

2014C.L. Huang^, F.Y. Jian^, H.J. Huang^, W.C. Chang^, W.L. Wu^, C.C. Hwang*, R.H. Lee*, and T.Y. Chiang* (2014) Deciphering mycorrhizal fungi in cultivated Phalaenopsis microbiome with next-generation sequencing of multiple barcodes,Fungal Diversity, 2014:02:6.

2014C.H. Chien, Y.F. Chiang-Hsieh, A.P. Tsou, S.L. Weng, W.C. Chang*, and H.D Huang* (2014) Large-Scale Investigation of Human TF-miRNA Relations Based on Coexpression Profiles,BioMed Research International, 2014:page8.

2013C.T. Lu, K.Y. Huang, M.G. Su, T.Y. Lee*, N.A. Bretana, W.C. Chang, Y.J. Chen, Y.J. Chen and H.D. Huang* (2013) DbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications,Nucleic Acids Research, 41:D295-305.

2012Y.A. Chen, Y.C. Wen, and W.C. Chang* (2012) AtPAN: an integrated system for reconstructing transcriptional regulatory networks in Arabidopsis thaliana,BMC Genomics, 13:85.

2012T.Y. Lee*, W.C. Chang*, J. B.K. Hsu, T.H. Chang and D.M. Shien. (2012) GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group,BMC Genomics, 13(Suppl 1):S3.

2011C.H. Chien, Y.M. Sun, W.C. Chang, P.Y. CH, T.Y. Lee, W.C. Tsai, J.T. Horng, A.P. Tsou* and H.D. Huang* (2011) Identifying transcriptional start sites of human microRNAs based on high-throughput sequencing data,Nucleic Acids Research, 39(21):9345-9356.

2011T.Y. Lee, J. B.K. Hsu, W.C. Chang*, and H.D. Huang* (2011) RegPhos: a system to explore the protein kinase–substrate phosphorylation network in humans,Nucleic Acids Research, 39:D777-787.

2010Y.K. Wang, W.C. Chang, P.F. Liu, M.K. Hsiao, C.T. Lin, S.M. Lin, and R.L. Pan* (2010) Ovate family protein 1 as a plant Ku70 interacting protein involving in DNA double-strand break repair,Plant Molecular Biology, 74(4-5):453-466.

2010T.Y. Lee, J.B.K. Hsu, F.M. Lin, W.C. Chang*, P.C. Hsu, and H.D. Huang (2010) N-Ace: using solvent accessibility and physicochemical properties to identify protein N-Acetylation sites,Journal of Computational Chemistry, 31:2759–2771.

2009W.C. Wang, F.M. Lin, W.C. Chang, K.Y. Lin, H.D. Huang*, and N.S. Lin*. (2009) miRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression,BMC Bioinformatics, 10:328.

2009C.H. Chou^, W.C. Chang^, C.M. Chiu, C.C. Huang, H.D. Huang* (2009) FMM: a web server for metabolic pathway reconstruction and comparative analysis,Nucleic Acids Research, 37:W129-134.

2009T.Y. Lee, J.B.K. Hsu, W.C. Chang, T.Y. Wang, P.C. Hsu, and H.D. Huang* (2009) A comprehensive resource for integrating and displaying protein post-translational modifications,BMC Research Notes, 2:111.

2009W.C. Chang^, T.Y. Lee^, D.M. Shien, J.B.K. Hsu, J.T. Horng, P.C. Hsu, T.Y. Wang, H.D. Huang*, and R.L. Pan* (2009) Incorporating support vector machine for identifying protein tyrosine sulfation sites,Journal of Computational Chemistry, 30:2526-2537.

2009D.M. Shien, T.Y. Lee, W.C. Chang, J.B.K. Hsu, J.T. Horng, P.C. Hsu, T.Y. Wang and H.D. Huang* (2009) Incorporating structural characteristics for identification of protein methylation sites,Journal of Computational Chemistry, 30:1532-1543.

2008W.C. Chang, T.Y. Lee, H.D. Huang*, H.Y. Huang, and R.L. Pan* (2008) PlantPAN: Plant Promoter Analysis Navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups,BMC Genomics, 9:561.

2008W.C. Chang, Y.K. Wang, P.F. Liu, Y.F. Tsai, L.R. Kong, C.K. Lin, C.H. Yang, and R.L. Pan* (2008) Regulation of Ku gene promoters in Arabidopsis by hormones and stress,Functional Plant Biology, 35:265-280.

2008P.F. Liu, W.C. Chang, Y.K. Wang, H.Y. Chang, and R.L. Pan* (2008) Signaling pathways mediating the suppression of Arabidopsis thaliana Ku gene expression by abscisic acid,Biochimica et Biophysica Acta-Gene Structure and Expression, 1779:164-174.

2008P.F. Liu, Y.K. Wang, W.C. Chang, H.Y. Chang, and R.L. Pan* (2008) Regulation of Arabidopsis thaliana Ku genes at different developmental stages under heat stress,Biochimica et Biophysica Acta-Gene Structure and Expression, 1779:402-407.

2007P.F. Liu, W.C. Chang, Y.K. Wang, S.B. Munisamy, S.H. Hsu, H.Y. Chang, S.H. Wu, and R.L. Pan* (2007) Differential regulation of Ku gene expression in etiolated mung bean hypocotyls by auxins,Biochimica et Biophysica Acta-gene Structure and Expression, 1769:443-454.

2007Y.Y. Hsiao, Y.J. Pan, S.H. Hsu, Y.T. Huang, T.H. Liu, C.H. Lee, P.F. Liu, W.C. Chang, Y.K. Wang, L.F. Chien, R.L. Pan* (2007) Functional roles of arginine residues in mung bean vacuolar H+-pyrophosphatase,Biochimica et Biophysica Bcta-Bioenergetics, 1767:965–973.

2004K.H. Yan, P.F. Liu, H.T. Tzeng, W.C. Chang, W.G. Chou, R.L. Pan* (2004) Characterization of DNA end-binding activities in higher plants,Plant Physiology and Biochemistry, 8585:617–622.