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See Our Team

年度 著作
2019C.N. Chow, T.Y. Lee, Y.C. Hung, G.Z. Li, K.C. Tseng, Y.H. Liu, P.L. Kuo, H.Q. Zheng, W.C. Chang* (2019) PlantPAN3.0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants,Nucleic Acids Research, 47(D1):D1155–D1163.

2018K.C. Tseng, Y.F. Chiang-Hsieh, H. Pai, C.N. Chow, S.C. Lee, H.Q. Zheng, P.L. Kuo, G.Z. Li, Y.C. Hung, N.S. Lin, and W.C. Chang* (2018) microRPM: a microRNA prediction model based only on plant small RNA sequencing data.,Bioinformatics, 34(7):1108–1115.

2018C. N. Chow, Y. F. Chiang-Hsieh, C. H. Chien, H. Q. Zheng, T. Z. Tzong, N. Y. Wu, K. C. Tseng, P. F. Hou and W. C. Chang* (2018) Delineation of condition specific cis- and trans- acting elements in plant promoters under various endo- and exogenous stimuli,BMC Genomics, 19(Suppl 2):85.

2018P. F. Hou, C.H. Chien, Y.F. Chiang-Hsieh, K.C. Tseng, C.N. Chow, H.J. Huang and W. C. Chang* (2018) Paddy-upland rotation for sustainable agriculture with regards to diverse soil microbial community,Scientific Reports, 8:7966.

2017H.Q. Zheng, N.Y. Wu, C.N. Chow, K.C. Tseng, C.H. Chien, Y.C. Hung, G.Z. Li, and W.C. Chang* (2017) EXPath tool-a system for comprehensively analyzing regulatory pathways and coexpression networks from high-throughput transcriptome data.,DNA Research, 24(4):371-375.

2016C.N. Chow, H.Q. Zheng, N.Y. Wu, C.H. Chien, H.D. Huang, T.Y. Lee, Y.F. Chiang-Hsieh, P.F. Hou, T.Y. Yang, and W. C. Chang* (2016) PlantPAN 2.0: an update of Plant Promoter Analysis Navigator for reconstructing transcriptional regulatory networks in plants.,Nucleic Acids Research, 44(D1):D1154-60.

2016W. C. Chang, H.Q. Zheng, C. N. N. Chen (2016) Comparative transcriptome analysis reveals a potential photosynthate partitioning mechanism between lipid and starch biosynthetic pathways in green microalgae, Algal Research, 16:54-62.

2015C.H. Chien, C.N. Chow, N.Y. Wu, Y.F. Chiang-Hsieh, P.F. Hou, and W.C. Chang* (2015) EXPath: a database of comparative expression analysis inferring metabolic pathways for plants,BMC Genomics, 16(Suppl 2):S6:page10.

2015C.H. Chien, Y.F. Chiang-Hsieh, Y.A. Chen, C.N. Chow, N.Y. Wu, P.F. Hou, and W.C. Chang* (2015) AtmiRNET: a web-based resource for reconstructing regulatory networks of Arabidopsis microRNAs,Database (Oxford), 2015:bav042.

2014H. Q. Zheng, Y. F. Chiang-Hsieh, C. H. Chien, J. B.K. Hsu, T. L. Liu, C. N. Chen, and W. C. Chang* (2014) AlgaePath: comprehensive analysis of metabolic pathways using transcript abundance data from next-generation sequencing in green algae,BMC Genomics, 15:196.

2014C.L. Huang^, F.Y. Jian^, H.J. Huang^, W.C. Chang^, W.L. Wu^, C.C. Hwang*, R.H. Lee*, and T.Y. Chiang* (2014) Deciphering mycorrhizal fungi in cultivated Phalaenopsis microbiome with next-generation sequencing of multiple barcodes,Fungal Diversity, 2014:02:6.

2014C.H. Chien, Y.F. Chiang-Hsieh, A.P. Tsou, S.L. Weng, W.C. Chang*, and H.D Huang* (2014) Large-Scale Investigation of Human TF-miRNA Relations Based on Coexpression Profiles,BioMed Research International, 2014:page8.

2013C.T. Lu, K.Y. Huang, M.G. Su, T.Y. Lee*, N.A. Bretana, W.C. Chang, Y.J. Chen, Y.J. Chen and H.D. Huang* (2013) DbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications,Nucleic Acids Research, 41:D295-305.

2012Y.A. Chen, Y.C. Wen, and W.C. Chang* (2012) AtPAN: an integrated system for reconstructing transcriptional regulatory networks in Arabidopsis thaliana,BMC Genomics, 13:85.

2012T.Y. Lee*, W.C. Chang*, J. B.K. Hsu, T.H. Chang and D.M. Shien. (2012) GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group,BMC Genomics, 13(Suppl 1):S3.

2011C.H. Chien, Y.M. Sun, W.C. Chang, P.Y. CH, T.Y. Lee, W.C. Tsai, J.T. Horng, A.P. Tsou* and H.D. Huang* (2011) Identifying transcriptional start sites of human microRNAs based on high-throughput sequencing data,Nucleic Acids Research, 39(21):9345-9356.

2011T.Y. Lee, J. B.K. Hsu, W.C. Chang*, and H.D. Huang* (2011) RegPhos: a system to explore the protein kinase–substrate phosphorylation network in humans,Nucleic Acids Research, 39:D777-787.

2010Y.K. Wang, W.C. Chang, P.F. Liu, M.K. Hsiao, C.T. Lin, S.M. Lin, and R.L. Pan* (2010) Ovate family protein 1 as a plant Ku70 interacting protein involving in DNA double-strand break repair,Plant Molecular Biology, 74(4-5):453-466.

2010T.Y. Lee, J.B.K. Hsu, F.M. Lin, W.C. Chang*, P.C. Hsu, and H.D. Huang (2010) N-Ace: using solvent accessibility and physicochemical properties to identify protein N-Acetylation sites,Journal of Computational Chemistry, 31:2759–2771.

2009W.C. Wang, F.M. Lin, W.C. Chang, K.Y. Lin, H.D. Huang*, and N.S. Lin*. (2009) miRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression,BMC Bioinformatics, 10:328.

2009C.H. Chou^, W.C. Chang^, C.M. Chiu, C.C. Huang, H.D. Huang* (2009) FMM: a web server for metabolic pathway reconstruction and comparative analysis,Nucleic Acids Research, 37:W129-134.

2009T.Y. Lee, J.B.K. Hsu, W.C. Chang, T.Y. Wang, P.C. Hsu, and H.D. Huang* (2009) A comprehensive resource for integrating and displaying protein post-translational modifications,BMC Research Notes, 2:111.

2009W.C. Chang^, T.Y. Lee^, D.M. Shien, J.B.K. Hsu, J.T. Horng, P.C. Hsu, T.Y. Wang, H.D. Huang*, and R.L. Pan* (2009) Incorporating support vector machine for identifying protein tyrosine sulfation sites,Journal of Computational Chemistry, 30:2526-2537.

2009D.M. Shien, T.Y. Lee, W.C. Chang, J.B.K. Hsu, J.T. Horng, P.C. Hsu, T.Y. Wang and H.D. Huang* (2009) Incorporating structural characteristics for identification of protein methylation sites,Journal of Computational Chemistry, 30:1532-1543.

2008W.C. Chang, T.Y. Lee, H.D. Huang*, H.Y. Huang, and R.L. Pan* (2008) PlantPAN: Plant Promoter Analysis Navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups,BMC Genomics, 9:561.

2008W.C. Chang, Y.K. Wang, P.F. Liu, Y.F. Tsai, L.R. Kong, C.K. Lin, C.H. Yang, and R.L. Pan* (2008) Regulation of Ku gene promoters in Arabidopsis by hormones and stress,Functional Plant Biology, 35:265-280.

2008P.F. Liu, W.C. Chang, Y.K. Wang, H.Y. Chang, and R.L. Pan* (2008) Signaling pathways mediating the suppression of Arabidopsis thaliana Ku gene expression by abscisic acid,Biochimica et Biophysica Acta-Gene Structure and Expression, 1779:164-174.

2008P.F. Liu, Y.K. Wang, W.C. Chang, H.Y. Chang, and R.L. Pan* (2008) Regulation of Arabidopsis thaliana Ku genes at different developmental stages under heat stress,Biochimica et Biophysica Acta-Gene Structure and Expression, 1779:402-407.

2007P.F. Liu, W.C. Chang, Y.K. Wang, S.B. Munisamy, S.H. Hsu, H.Y. Chang, S.H. Wu, and R.L. Pan* (2007) Differential regulation of Ku gene expression in etiolated mung bean hypocotyls by auxins,Biochimica et Biophysica Acta-gene Structure and Expression, 1769:443-454.

2007Y.Y. Hsiao, Y.J. Pan, S.H. Hsu, Y.T. Huang, T.H. Liu, C.H. Lee, P.F. Liu, W.C. Chang, Y.K. Wang, L.F. Chien, R.L. Pan* (2007) Functional roles of arginine residues in mung bean vacuolar H+-pyrophosphatase,Biochimica et Biophysica Bcta-Bioenergetics, 1767:965–973.

2004K.H. Yan, P.F. Liu, H.T. Tzeng, W.C. Chang, W.G. Chou, R.L. Pan* (2004) Characterization of DNA end-binding activities in higher plants,Plant Physiology and Biochemistry, 8585:617–622.