Publications - students
Kuan-Chieh, Tseng
2020
EXPath 2.0: An Updated Database for Integrating High-Throughput Gene Expression Data with Biological Pathways, Plant and Cell Physiology, 61(10):1818–1827.
Ping-Fu, Hou
2020
Long-term effects of fertilizers with regional climate variability on yield trends of sweet corn, Sustainability, 12(9):3528.
Kuan-Chieh, Tseng
2020
sRIS: a small RNA illustration system for plant next-generation sequencing data analysis, Plant and Cell Physiology, 61(6):1204–1212.
Chi-Nga, Chow
2019
PlantPAN3.0: a comprehensive resource for gene regulatory networks and protein binding features of regulatory factors in plants., BSGC 2019.
Chi-Nga, Chow
2019
PlantPAN3.0: an upgraded resource for protein structure based features and genome wide map of regulatory factors in plants, 2019 多體學及精準醫學聯合會議.
Kuan-Chieh, Tseng
2019
EXPath 2.0: an update database for revealing critical plant metabolic pathways from high throughput gene expression data, 2019 多體學及精準醫學聯合會議.
Chi-Nga, Chow
2019
PlantPAN 3.0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants. Nucleic Acids Research, 47(D1):D1155-1163.
Ping-Fu, Hou
2018
Paddy-upland rotation for sustainable agriculture with regards to diverse soil microbial community, Scientific Reports, 22;8(1):7966.
Chi-Nga, Chow
2018
Delineation of condition specific cis- and trans- acting elements in plant promoters under various endo- and exogenous stimuli, BMC Genomics, vol.19 (Suppl 2):85.
Kuan-Chieh, Tseng
2018
microRPM: A microRNA Prediction Model based only on plant small RNA sequencing data, Bioinformatics, 34(7), 1108-1115.
Guan-Zhen, Li
2018
EXPath 2.0: an update version of database for identifying regulatory interactions in plant biological pathways, APBC 2018.
Chi-Nga, Chow
2017
Identification of Condition Specific Cis- and Trans-acting Elements in Plant Promoters under Various Endo- and Exogenous Stimuli, 2017 生物資訊暨生技產業發展經驗分享研討會.
Chi-Nga, Chow
2017
Identification of Condition Specific Cis- and Trans-acting Elements in Plant Promoters under Various Endo- and Exogenous Stimuli, 2017 生農環境及多樣性學門成果發表會.
Yu-Cheng, Hung
2017
A database for identifying regulatory interactions in biological pathways from plant high-throughput gene expression data, ISEGB 2017.
Han-Qin, Zheng
2017
EXPath tool-a system for comprehensively analyzing regulatory pathways and coexpression networks from high-throughput transcriptome data, DNA Research, 24(4):371-375.
Kuan-Chieh, Tseng
2017
Development of a system for small RNA next-generation sequencing data analysis, APBC 2017.
Chi-Nga, Chow
2016
PlantPAN 2.0: an update of Plant Promoter Analysis Navigator for reconstructing transcriptional regulatory networks in plants". Nucleic Acids Research, 44(D1):D1154-60.
Yi-Fan, Chiang-Hsieh
2015
Construction of microRNA prediction model and regulatory networks in plants, APBC 2015.
Chi-Nga, Chow
2015
EXPath: a database of comparative expression analysis inferring metabolic pathways for plants, APBC 2015.
Chi-Nga, Chow
2015
EXPath: a database for identifying the variation of gene expression in different metabolic pathways under various environments in plants, 2015 高雄儀器展.
Yi-Fan, Chiang-Hsieh
2015
Construction of microRNA prediction model and regulatory networks in plants, 2015 高雄儀器展.
Yi-Fan, Chiang-Hsieh
2015
AtmiRNET: a web-based resource for reconstructing regulatory networks of Arabidopsis microRNAs,Database (Oxford), 2015:bav042.
Chi-Nga, Chow
2015
EXPath: a database of comparative expression analysis inferring metabolic pathways for plants,BMC Genomics, 16(Suppl 2):S6:page10.
Chia-Hung, Chien
2014
Large-Scale Investigation of Human TF-miRNA Relations Based on Coexpression Profiles,BioMed Research International, 2014:page8.
Chi-Nga, Chow
2014
EXPath: a database for investigating the variation of plant gene expression in different metabolic pathways under various environments, ISEGB 2014.
Han-Qin, Zheng
2014
AlgaePath: comprehensive analysis of metabolic pathways using transcript abundance data from next-generation sequencing in green algae,BMC Genomics, 15:196.
Yi-Fan, Chiang-Hsieh
2013
Reconstruction of microRNA regulatory networks in Arabidopsis, ISEGB 2013.
Han-Qin, Zheng
2012
Metabolic Pathway Analysis and Gene Discovery for Biofuels Production in Neodesmus danubialis (UTEX 2219-4) by Transcriptome Sequencing Data, AYRCOB 2012.
Han-Qin, Zheng
2012
Transcriptome analysis under stress conditions in Neodesmus danubialis, GIW 2012.
Yi-An, Chen
2012
AtPAN: an integrated system for reconstructing transcriptional regulatory networks in Arabidopsis thaliana,BMC Genomics, 13:85.
CONTACT US
Plant Bioinformatics and Molecular Biology Laboratory
Institute of Tropical Plant Sciences and Microbiology
National Cheng Kung University
Prof. Wen-Chi Chang: sarah321@mail.ncku.edu.tw
PBMB Lab: wenchilab@gmail.com
Tel: +886-6-2757575 ext.58311
Address: (70101) No.1, University Road, Tainan City, Taiwan (R.O.C)
Copyright © Institute of Tropical Plant Sciences and Microbiology, College of Biosciences and Biotechnology, National Cheng Kung University, Tainan Taiwan.